NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196887_1013844

Scaffold Ga0196887_1013844


Overview

Basic Information
Taxon OID3300022178 Open in IMG/M
Scaffold IDGa0196887_1013844 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2525
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.124826Long. (o)-75.260873Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003880Metagenome464Y
F029596Metagenome188Y
F080624Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0196887_10138442F029596GGAGMSINKYTVVYTANDRYDSPIDEPTSRVEYIQGETLDIAIDEHIKHMKRWAIQGVIGEVIYLEGHIKQVDIGHGIGHTMNAYKDVVITGVNNDTIKFT
Ga0196887_10138443F003880GGAGGMTKKKTIEVHKILNLTKHQAKQILDILEGLRSINANTDEKVPLDYEQVCKLDGMEFQLASIVGAKVECEHGHYTRWSGAYEYK
Ga0196887_10138445F080624AGGAGMATINLTEGTHVYKSPERTKLEEIRKALMILTGNDGCVQYNTEVITLLCNQIEEIEREI
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