NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181353_1000272

Scaffold Ga0181353_1000272


Overview

Basic Information
Taxon OID3300022179 Open in IMG/M
Scaffold IDGa0181353_1000272 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)10298
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (72.22%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000166Metagenome / Metatranscriptome1810Y
F002099Metagenome / Metatranscriptome593Y
F021293Metagenome219Y
F069849Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0181353_100027212F002099N/AVFLHHRLGYDVKWVAALVLTLALQSTGKDLCSVREFYGIAYTIHNPSERHQQMSAWLTNHQHLCKSTDMVVIWNNLSEWAGTADSAELRHKVIIVYKNALEREKK
Ga0181353_100027213F021293GAGVIQIHKWYPFVFPNAFDIRAIAAEKRAERLEFEYKQAVEAEKVCKAVDAYAIELYDKRARQHTIELGMFKNRIDKLV
Ga0181353_100027217F000166AGGMSNIPTPEDSALFAQSVRKWQQLLNLGDWRIEKGLKPAKNAMASVEFNEGARLATYRLGDFGAEKITPESLDQTALHELLHVFLHDLMTVAQDPKSSQDEIEAQEHRVVNLLEKILFKDSNGRS
Ga0181353_100027218F069849AGGAMGAHNETCTDMEFIQLWGQLQSAQKMADHLGINTRAVHLRRRWIEKEYNMTLNAKDHRGDLYNNLFPLF
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