NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181353_1000487

Scaffold Ga0181353_1000487


Overview

Basic Information
Taxon OID3300022179 Open in IMG/M
Scaffold IDGa0181353_1000487 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)7720
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (62.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001322Metagenome722Y
F013317Metagenome / Metatranscriptome272Y
F014613Metagenome / Metatranscriptome261Y
F031093Metagenome / Metatranscriptome183N
F074582Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0181353_100048711F031093N/AMVAAELATLVASVLGSIALLIAGLRYIIKLENIPIVSRLDKMESQLELALARGVRNGNAKTRK
Ga0181353_100048713F013317N/ALIEKKKWDYLADIRARTGAKTLYINATPKGIYQFDLGALIEPEWVLKRLPITTDFGNKSTNERLAGFLDIRLAELLLV
Ga0181353_100048715F014613AGAAGMFPNLSDEAVVGIIIGVPFIGLYIWSLVTSAKAKAFNEGYKRGRSSVRYTEIVK
Ga0181353_100048716F074582N/AMKVIREAGQVSDTQKSLSEWLEEAGATLFDRGIEYGDPRH
Ga0181353_10004876F001322AGTAGMTLWNPVYRVKVDGVTVTSATLSGLTITSGRTNIYSQPIAGYCNLSLIETAEAAIPYEVNDAVTIEVQNSTGAYVNLFGGFITDLGITVQTSGSTATSQQIRIVAVGALARLARAVYTGNFGHQFDGDRIEELLSGVLFDQWNEVPAAETWNGYNATTQWQDAENSGVGEIDTPGDYELHSETGLNDTVYNLASRYATSGLGYLYEDAQGRIGYADSTHRAQYLATNGYVDLDGNHAIGPALSIVKRAGDIRNSITLGYGTGSASVTDEDADSISAYGQLATTISTTLRHQADAEAQAAFYLALRANPEFSLQQITFPVGSSEIDNSDRDNLLNVFMGMALNITNLPSNMVNGEFLGFVEGWTWTAGLNRLDLTMNLSALQFSLQAFRWNSVPDTEFWNTLSPTLDWANATIVG
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