NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181353_1002237

Scaffold Ga0181353_1002237


Overview

Basic Information
Taxon OID3300022179 Open in IMG/M
Scaffold IDGa0181353_1002237 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4145
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000973Metagenome / Metatranscriptome817Y
F012964Metagenome275Y
F037205Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0181353_10022372F037205N/ALKASQNSGTSGAEVSDLRPEQAYDTDLRRLDPEERFATESINNNQERVARYMKAARTAGAYQQRTGISEPSIRGKTPRSRASIEGTELPTTGDSGGRSGAIGYARKPKPNLRKPFV
Ga0181353_10022377F000973N/AMQYGIRKGLEDIAHELKGIKTVLSSLWHSRYADGETTTLTPEAFADEYISTEECGRRLGVSDQTIRNWISIGRKTPEKGWVEGVHYVNVSPDHRKKALIRIPWNRLIQSFAKNKEIGFSDLRSGNALYAPRPFGRLE
Ga0181353_10022378F012964N/AMEDQIPPSQQPVRFPNQPEITPEQLEELKARARQLAIQQTLAQQAATPAQPQVIYVRRNLTVAELLLVILLSCGIVTGIQWSWSAISSLLPRIEVKVR
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