NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181353_1003480

Scaffold Ga0181353_1003480


Overview

Basic Information
Taxon OID3300022179 Open in IMG/M
Scaffold IDGa0181353_1003480 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3540
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022651Metagenome / Metatranscriptome213Y
F043944Metagenome155Y
F054875Metagenome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0181353_10034801F022651N/AMTTTIKDSNELLGFLVSQAESRKDWFGFSQQRMTAVTLAHQIAQNHADKMTPEEVVSYALQLNHLIFHKIIKAT
Ga0181353_10034803F054875AGGMTKFSSAFGDKYQANRKNLMTRSFELGGHTFKVRIPLVSESDAIYKKVSEPDAEIVETIYQNITASLRQFENNQSEEFKFVDGDILVDGRSMREAAKNKAITEARITEFFKLLVPELEGATLEDLTYKDIEDEFPMSVQMQIVEKIGEVVSPTYREARGN
Ga0181353_10034804F043944N/AMIFNGHTHETIAELDDVTMTNIQTMYSDGLIGNGGLLTQLATLTNGVFNYMRTANSPPYKLANIMGCAYDYIYPPLPESTKQAAVNDSLLMFMTQSQGFNKELFEVKNG
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Institute for Fundamental Biomedical Research
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