NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181353_1008043

Scaffold Ga0181353_1008043


Overview

Basic Information
Taxon OID3300022179 Open in IMG/M
Scaffold IDGa0181353_1008043 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2587
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008128Metagenome / Metatranscriptome338Y
F029716Metagenome187Y
F041147Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0181353_10080433F041147N/AMPLLLMDTSQEPVDTIKQWQDWYRKYRIVAEIDVPLVTKESRENLHETSNATNSLAECCTAMSFQKAKEHFADTIAEFANELSGKELYKAFYAAAMDNMDCVEKEYNKAKQLVDMLRCNNVAP
Ga0181353_10080435F008128N/AMEPVTVPKLSVSFAIDLELEYNSFGGKTADEIAEALQDELDDLLFELPNVTGVYTSCTAIQFND
Ga0181353_10080438F029716N/ANSPTELKSSKSTPFDQNESSQNQNWTWYHPSIQESFYQKIQAPTDGEDARIKMSCHEHAIKDFDLQLEMNGLQMTMLMEEGKVLDYHMSEYEDLEQKKLKLLVGKRFHQNAANAYWYHMQREKTGK
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