NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181353_1024047

Scaffold Ga0181353_1024047


Overview

Basic Information
Taxon OID3300022179 Open in IMG/M
Scaffold IDGa0181353_1024047 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1609
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000962Metagenome / Metatranscriptome820Y
F014847Metagenome / Metatranscriptome259Y
F016528Metagenome / Metatranscriptome246N
F028145Metagenome / Metatranscriptome192N
F045700Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0181353_10240472F000962N/AMNIHVPEEIKSKYPHMEFRGKQRQLNDRIVIEAYNHAINQNFFYSFDEDFFWFPDQIPDYKLPKVS
Ga0181353_10240473F045700GGAMNKIRPSQCFECETGTYKDVTVNYFSQLSDGRTCITKDVTIQRCDTCGAEIFDSKASQLVENNIRQQYPDYYEHSRSRRN
Ga0181353_10240474F028145N/AMKIFLVFAINLTVSLLTSILLYKLFKVDVSPTIISIGLIVVYMCLPQRFHDWIAEK
Ga0181353_10240475F014847AGGMEFESNEQLLGDLMEQLHTLHKENARLLQKIEALEKHNEELNRKLKSIQAIFL
Ga0181353_10240476F016528GAGMINNNELFAKVLADNPLPYRCGDKVNTNRGIGYISGYNFKDREKTWKFTIRPYGLTNYYIDVETVYGKVD
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