Scaffold Ga0181353_1033378

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181353_1033378

Scaffold Ga0181353_1033378

Overview

Basic Information
Taxon OID	3300022179 Open in IMG/M
Scaffold ID	Ga0181353_1033378 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1364
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.2382	Long. (^o)	-86.2805	Alt. (m)		Depth (m)	8
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F055432	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181353_10333784	F055432	AGGAG	MKNLSFDDVAFLDVYQHAVAVASRADVVRFLSADPDERSSREFCDSMDDVYSSIADAHEVWFCALKHARTNKGMTVGKLSAALANLPRDLPVLIWDAGTRLQIAHIDDSFVEDENPRLELNTDRDD

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