NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196891_1000643

Scaffold Ga0196891_1000643


Overview

Basic Information
Taxon OID3300022183 Open in IMG/M
Scaffold IDGa0196891_1000643 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7975
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009001Metagenome324Y
F017635Metagenome / Metatranscriptome239Y
F048963Metagenome / Metatranscriptome147N

Sequences

Protein IDFamilyRBSSequence
Ga0196891_10006432F048963N/AMNETYADFEPTDLPFDWSGVDHEEIKRGFDFFYANNQITGFKMDENGNYVRDQDGKLIAYRTSKQRHQPKSWFNNYYQ
Ga0196891_10006434F017635N/AMNDLCDDSLEALIQHYLKLKHKMPDNISVRERLLELEREQFNRELKASTIEGVIRQNTENPL
Ga0196891_10006435F009001N/AMSVTIYLTDHNGRKVAFFYRIDSERYLTCPQLIWACRNHPEYQGTAESKEDFIEQAKGVIKQLNRSRKKCKECDNDLHLRENESNLCDTCNPITK
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