NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196891_1002496

Scaffold Ga0196891_1002496


Overview

Basic Information
Taxon OID3300022183 Open in IMG/M
Scaffold IDGa0196891_1002496 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3945
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005415Metagenome401Y
F054048Metagenome / Metatranscriptome140N
F099208Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0196891_10024964F099208GGAGGMGLVVDQKKEEFIGQGFSKKEARIKAHEWCEQTNTCRGCSKVVRLDWWSWKQGYCKDCID
Ga0196891_10024966F054048AGGMTDDKNINDIIKPLNRIANALDEVLTLVKKDMEDNKARITAQWDNELDKKEVVKSDENFNYSQLSFPFSEESK
Ga0196891_10024967F005415N/AEIERRPEGAKLKQLKELEEKAIDTVMEAGTPDSLAISLNKISEKIGLSWNQDLTALPNLKKE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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