NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196891_1026655

Scaffold Ga0196891_1026655


Overview

Basic Information
Taxon OID3300022183 Open in IMG/M
Scaffold IDGa0196891_1026655 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1092
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046649Metagenome / Metatranscriptome151Y
F082623Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0196891_10266551F082623GGAGGMARQHPHAHRINSSEQISVTATSAQSGTCPFGCNIAHITAHGTSGSPLNFFKIGNNPTATTDGSSSFIHQGDHDYVIVRPDSSLGAGDGEKIAAVCTSGTATIFIDWVES
Ga0196891_10266552F046649AGGAMAYQNNIASRIISSENITSTGTSAQSGPAPFGATIARIATSANVNIVIGPNPTATAAGTLIEPADASYFVVKPASSVGGTDGEKIASIGTATVNVTWLEG
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Institute for Fundamental Biomedical Research
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