NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196899_1000397

Scaffold Ga0196899_1000397


Overview

Basic Information
Taxon OID3300022187 Open in IMG/M
Scaffold IDGa0196899_1000397 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23114
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (54.55%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004106Metagenome453Y
F005704Metagenome / Metatranscriptome392Y
F016805Metagenome / Metatranscriptome244N
F084178Metagenome112N

Sequences

Protein IDFamilyRBSSequence
Ga0196899_100039723F005704AGGMDNRLSLLGGLLALLTTVVATTVTIDSRYAKSAEVKQQFCQARKQQLRDRIFELDLKANKTPNDKALREYLQQQLNDGC
Ga0196899_100039725F016805N/AVDPFLTPLVTAAIIAGVGALWRIDKRASVMDTRMALILEQITALRSDHKERLDDHEQRLRQIESRS
Ga0196899_100039729F084178GGAMIVEFSVEEELRIESQARTVLHCGDSQQVAKLCASLVKQNAYLSRLVRQATGHITQLELMQVLEGLDKPDPERSETVRLLCESGNWDLTHQNDTRDRSLFVTLLLIALAPFPWLVGAFAGLLTTVMRTMTQVIRGLAS
Ga0196899_10003975F004106AGGAMSHSSAEIDPSYSIGADFVNSTDAQAGRWNRITILKNNTSFSALTAQNWTGNSIVGESLPAGFEIQGVFTAFALSSSGAVVAYKI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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