NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196899_1007097

Scaffold Ga0196899_1007097


Overview

Basic Information
Taxon OID3300022187 Open in IMG/M
Scaffold IDGa0196899_1007097 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4622
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006492Metagenome / Metatranscriptome372Y
F015852Metagenome / Metatranscriptome251Y
F024767Metagenome / Metatranscriptome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0196899_100709711F024767GGAMNHLEFQNRVLLDKTIPAFVRLVASKALTDLRTAEVDAGTIRVESFVFWQLVRWSGAEPIKSGLYTFIRIYDDQ
Ga0196899_10070975F006492AGGMDAILEALASYGIAGIFLAVLVYYLNKLTDIHREERRDWQEANDKHVEKFADVISENTKALVEMRGELKENRCKM
Ga0196899_10070977F015852GAGGLGRDIAIRLVKVYTPYLLAFLLGVIIASKGCGEPETITKVVERPVPTIEYVERWRTDTVRFVSKQLVTRTDTIYSEKVVTRLDTLLLVDTLKIVETWLSEVANYDTTVNDVRLTWSNYQNRTENLKVELRKKPLSWALGVHGLVGLQSDFVESYTPLFGIGLQGTVKRTYFSANYGFNGQHFIGVGIGRNIIQK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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