Scaffold Ga0196899

Basic Information
Taxon OID	3300022187 Open in IMG/M
Scaffold ID	Ga0196899_1011496 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0196899_1011496 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3476
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (12.50%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3476

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (12.50%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.12

Long. (^o)

-75.25

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002333	Metagenome	569	Y
F002738	Metagenome / Metatranscriptome	533	Y
F013517	Metagenome / Metatranscriptome	270	Y
F038646	Metagenome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196899_10114962	F001018	N/A	MSQITQAKLKDLSVIKLYEHYDALEKSLPLLTPESQELAKAELESCANLRSEKVDRVYYAMASHEDALERIKKEGELISQAKKHHEAQLRSLKGLLNYLRRVLPLDSNKITGRNYQFTLVRKKDLTVEINSDPEFWHTEERSAYCIEEEVTTTKRVVLRSMGGEIISDRTEPKTLTKVLPNLDAIRSAYQEGKPLPSGVKVTQEYSVRSKRIFGEPRLDLVSSEYPGLVLPEDSGAA
Ga0196899_10114963	F013517	N/A	MFESLFATVLPVIKDLLWAAAGMLLTYVLNKVQSQFN
Ga0196899_10114964	F002738	AGGA	MRYALLVTMFYPLMSIDTYGLSSEQYEEFFEDNVRFGAKLYLKTCNVLNEEGAGHIDFKTILDIYQEAVYTTNDDCRRYQKSNNPEALKEATADIFGITPTREELMEEIQSVSAKVEALVDYISNLITVTTAGLDGIATTLDNKVD
Ga0196899_10114965	F038646	N/A	MNDSDDILEYASQLAMQPPMTPPKDHDYRLQISPDTHWELVKLAAELRMDPESYAEEILNMHAEDAVSKRVVAKAYNDPSWVAKLNLECVDEPDGTMSIHIVWDEKDPDLQYWTNLGAKGQENFILNALRFACNDVLSTHVD
Ga0196899_10114966	F002333	N/A	MSTQLLQQELNCAQSLIYTRTNIGRAFQDFDDTEIAGIYLRDDNCLVVRRDGSEQAYPRELIKLAFTNYTNRLKDFFSYLGPNYRGPSVWHNNAYVMFKGWHYSHALGHLTHNAKLQAHWADKFIHVTEQQKVISLLQSDQTDLGHLVAPEGLRLPNRPIDLDSDMEDQESGVPPVHAEPYCSCGSFQRQLLNLSEFQSEIQGFKPWCIHLSWFGKYRELLCKRTEARNASPSGTPEKCVAWWYAPPKDSISDGRFVLLYTNSGAQSPLSHWRTYKAKEVFTQYHAWDLFFNMMEAGYVPFPGVSLPQLKSAIKKA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0196899_1011496

Overview

Ecosystem & Geography

Associated Families

Sequences