NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196899_1051424

Scaffold Ga0196899_1051424


Overview

Basic Information
Taxon OID3300022187 Open in IMG/M
Scaffold IDGa0196899_1051424 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1349
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006684Metagenome367Y
F009110Metagenome323N
F022198Metagenome215N
F030097Metagenome186N

Sequences

Protein IDFamilyRBSSequence
Ga0196899_10514241F006684N/AMPCTSFNSNHKQTMQKIIITYIIGSAFALGLLNHAVNKAQEDIETLAEVLVHHSDTLEDHRGVLLQMIDDLTVPYM
Ga0196899_10514243F030097N/AMKALDTAGTQSKISSCMGFMASGAARDAYRRLLTASTVGESKGEQRKSVFSRTTKEGVKK
Ga0196899_10514244F009110AGAAGGMNESMITSAVLYMESLKDKVPPAGEDDIIVKHGTPHMRTLGIDPHEAVKAVDKLREQGMTARDAYGQVGMTQSQYYKTKKGVTNRK
Ga0196899_10514245F022198AGGAGMKTIQQYRKDHPQLSEEQVHSAYHITEIDAPEFSVSGFTLIARGRCLAIHENGNIAPLRLKESYQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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