NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196899_1121216

Scaffold Ga0196899_1121216


Overview

Basic Information
Taxon OID3300022187 Open in IMG/M
Scaffold IDGa0196899_1121216 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)753
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003865Metagenome464Y
F057322Metagenome136N

Sequences

Protein IDFamilyRBSSequence
Ga0196899_11212161F057322N/AKSKNIITKEQQADFKNRVGKDRTALAQFNEMVTEADEPRLAYKGQSPAQIEMLRAKGLTPATSINKTQRITLLKDTNTLLNEAAAMDAPKEVKEKTFIESMRKKFGDFADNPIIRKIASRALMILNAIPTSVDFIPMDLLEEGMNMMDAKPEMVAKGGIMNINDITRPVGV
Ga0196899_11212162F003865AGGAGMAIEKVNEEIDLEIVPDSAQEISTPMMEGDAMILDDGSAIVNPVEDTSMEGAFNANLAELIPDDELESLAGGLINDYEY
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Institute for Fundamental Biomedical Research
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