NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190313_1008172

Scaffold Ga0190313_1008172


Overview

Basic Information
Taxon OID3300022188 Open in IMG/M
Scaffold IDGa0190313_1008172 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-10-11_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4064
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5931Alt. (m)Depth (m)1999
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023017Metagenome211Y
F029623Metagenome187Y
F084954Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0190313_10081722F023017GGAGGMRLKKEQREEMKQKIVEFLKNVDGHIASIPMLAKVIKVSPPTTKSIVGELEVEKKVKVTTLGGVYIVQLKEEVNDYE
Ga0190313_10081726F029623GAGMNTYTKYVRVRLGQGNLIIEVSKDAFKSDEAKEETVKELKQIIKTYFNLRFFIRLSIVYAFTALFCACVALVIVLVR
Ga0190313_10081729F084954GAGGLNFLRKVKNVLADKRGYNDMVIMATSIITTVVVAIIGVYISSQIYETTNLSSDSPFNTAMNAAINIMNTTFPLIVVVAIAIIAGAIMTYLLGGFGIGGGEKGKKGE
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