NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190313_1012226

Scaffold Ga0190313_1012226


Overview

Basic Information
Taxon OID3300022188 Open in IMG/M
Scaffold IDGa0190313_1012226 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-10-11_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3096
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5931Alt. (m)Depth (m)1999
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017081Metagenome242Y
F058593Metagenome134N

Sequences

Protein IDFamilyRBSSequence
Ga0190313_10122261F058593N/AGIDKTIRIYPKADHYTVILTPVTSSIVSSEDYITFNLSYEIIDEEEINLSLVYSDALNQTQNLTFFVYNSTTLLYSQNFTNTSNITVSYTVPYEAGEEYMWGYSAYHSKFGEMGRSRILRIAWFLDLDISRTYCTWIAIAIILFLTAMFSFTTVKFGYVAIPIVSLIFAFIGWLPNISIIIIALCLGILAYMSKREKEVGV
Ga0190313_10122263F017081GGAGMEERGRKWWWKGICILGILTFLIATAQAIDITEITATETQIKVTIANASSSGYIFVSPSNKSFPYAYSHQGNGTYIITATFLKVNTTYYVKACDNENCSNVVSVNVSKEEKLVEQNFTAPFNNLMQGGNFLNISKLGETIPSVYTSLLTDMFWAMLFGGIFLAYWIRQEDVMLPSIVGMISGVAMIGLFPPSAQHIAYILLVISIAGTLYTIIKARR
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