NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181354_1018729

Scaffold Ga0181354_1018729


Overview

Basic Information
Taxon OID3300022190 Open in IMG/M
Scaffold IDGa0181354_1018729 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2172
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009954Metagenome / Metatranscriptome310Y
F016152Metagenome / Metatranscriptome249Y
F084214Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0181354_10187291F016152N/AMVSVETGISPNDLLEAPEGILEAIVIYLKQKAKEASRK
Ga0181354_10187292F009954AGGMDGLFIKIRTTDGEEGVYSIRPKTIVAFENKFNKGFAKLLTEDQKLEHIYYLAHGALKDAGKAPKPFGDAFLDTLDSVELANDPNSESTETA
Ga0181354_10187297F084214N/AAARLFVRKQSPFGIAGSVELGTVRLNSRLDPDVEMLLKTFRRNFGLAY
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