NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181354_1058677

Scaffold Ga0181354_1058677


Overview

Basic Information
Taxon OID3300022190 Open in IMG/M
Scaffold IDGa0181354_1058677 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1280
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011281Metagenome / Metatranscriptome292Y
F019469Metagenome229Y
F020665Metagenome / Metatranscriptome222Y

Sequences

Protein IDFamilyRBSSequence
Ga0181354_10586771F019469N/AEMVKLAGAFGGMIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLANQIKEDEARLVGLGR
Ga0181354_10586773F020665AGGAMRKRKGKSIKLVKTEEYKAVKIFVDVDDDLYEALAEAGKQHILKDKMACFEYALNKALLELCEEVK
Ga0181354_10586774F011281AGGAGGMSEFKQKVLTAAVDRYVLTKTQCEMLRQDAEVIGMKRATVMKKDGTTRRSFARSCSSCWVPMATHYKWLYSIVNELTMAVNAEHYRFDITGVQ
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