Basic Information | |
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Taxon OID | 3300022190 Open in IMG/M |
Scaffold ID | Ga0181354_1092535 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.N |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 990 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 43.1881 | Long. (o) | -86.344 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F006587 | Metagenome | 369 | Y |
F012016 | Metagenome | 284 | Y |
F014840 | Metagenome | 259 | Y |
F033405 | Metagenome | 177 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0181354_10925351 | F012016 | N/A | KQPYAWSTEEFNINGELVWSSITQFRPKELSWIRDLPNKKHYITITPLYKCEEKAEKITGVKSYKESTQKMMEAYNGL |
Ga0181354_10925352 | F006587 | GGAGG | MDSKKYDGTGFVLVGLIVGCCITWGVMKYNQTQTKYKMNLKCIQGELYEEVRTNMFVKSHLECFEQRTLQP |
Ga0181354_10925354 | F014840 | AGGTGG | MIPFSHAVVDSDGEVIRQYRWSVKEAKWHKDQGKNVVKLDKPIEVKEDLFKLVGECLF |
Ga0181354_10925355 | F033405 | AGTAGG | VFVLMNNKVKTDEQLIEMVNQYMEKYPTATRNQVVLHATGNATRVRSLDKRGLIKLPKALPKGANTRWNGYFRLDVKTPS |
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