NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181354_1122721

Scaffold Ga0181354_1122721


Overview

Basic Information
Taxon OID3300022190 Open in IMG/M
Scaffold IDGa0181354_1122721 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)833
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002009Metagenome / Metatranscriptome604Y
F010983Metagenome / Metatranscriptome296Y

Sequences

Protein IDFamilyRBSSequence
Ga0181354_11227211F010983N/AKAAEHGTAIHAEMENILLGRACSTDEVLKPYIETFRKWASENVEKTYWCEKSLVGAGYAGRCDAYVRMKGIGDAIIDLKNRKVNKKYNTPPFYPHDGQQLWAYRNASENPQAACVSVVLASNDPEYIEHHQWDEDELYQAGIAFCAMQKVWAWVKGYTPPGMKL
Ga0181354_11227212F002009GGAMTAPTIAEMGDAAADIVWRVMGKGSLKSDYGDWLLKDRPTHDYHIARAVRHLATAQMQLHKSTPCPDNNGETATDHLERALVRCLFTLAQI
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