NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196905_1000386

Scaffold Ga0196905_1000386


Overview

Basic Information
Taxon OID3300022198 Open in IMG/M
Scaffold IDGa0196905_1000386 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17963
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (14.81%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024891Metagenome / Metatranscriptome204Y
F025860Metagenome / Metatranscriptome200Y
F031874Metagenome / Metatranscriptome181N

Sequences

Protein IDFamilyRBSSequence
Ga0196905_100038612F031874N/AMVKRCLNNLREIFLYADSQPTEIMLGMLNFILLLPATMIELGWIPIYQITGIIVGGFQLFAVARQNINMRKTASFLSFVVFTMTIVLYGSCGYFWKSASHWGWVVLWLSSLSSVKRVTTEYYHKQWNNKA
Ga0196905_100038619F024891N/AMIIVEENTTATIKMYLRDFTTESFEIEIISEDERKEVVDTTLSGTYDDFRKVLTFTYDVSSLVAESFYVVKIWEASKVKLLSQDRMYIIPSGSDVSIYQPKLATTEKTMNNEFKIYGE
Ga0196905_10003863F025860N/AMETINLYQILDDLQSFADNLGSEWMKERLHMLEAQVAVLEMQSINK
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