NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0196905_1008518

Scaffold Ga0196905_1008518


Overview

Basic Information
Taxon OID3300022198 Open in IMG/M
Scaffold IDGa0196905_1008518 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3468
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002867Metagenome / Metatranscriptome524Y
F003805Metagenome / Metatranscriptome467Y
F006109Metagenome381Y
F017122Metagenome / Metatranscriptome242Y
F043896Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0196905_10085181F006109N/AESHSTRKGAMTRYVVMVEDRWVTAVYGPGKGIGFTESKEDASSWVTYERAVAAARAVAECTNSPAAVHSVDEPTYPRSWK
Ga0196905_10085182F017122N/AMEVVPFQEQLDPELRLGEGRSRTSSEKAQLFELKIWLPGQGAMRDLVRAESLQQAIEFAQNRYPNCKVEVPNTAAKKPKLARAKNGPRETARRRLKLVEKKNESADC
Ga0196905_10085183F043896GGAGMSQQIADWARQSWGEVIVDQNRVDLLDKLYFWDGRDKKDHPMHSTYTGLYEKYTAN
Ga0196905_10085184F003805AGGMRPIEHTTESCFHKAAQDKWLVDLFNKQDYRGLLEAALVLNTLHQLERTKAAWAIREAADNLAEQFGMDRDSA
Ga0196905_10085188F002867GGAMSVVHTTDYGNGFSLDQLENERGELYYRACKDSICRYAEDHYIAMMYLEGMGWDPKQQDP
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.