NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196905_1010374

Scaffold Ga0196905_1010374


Overview

Basic Information
Taxon OID3300022198 Open in IMG/M
Scaffold IDGa0196905_1010374 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3088
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009954Metagenome / Metatranscriptome310Y
F016152Metagenome / Metatranscriptome249Y
F031365Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0196905_10103743F009954AGGMDGLHIKVKTTDGTDGTFPLRPKSIVQFEQKFNKGFAKLLSEDQKLEHIYYLAWSALKDSGKAVKPFGDAFLDTLDSVELVVDPNSESTEIA
Ga0196905_10103744F016152N/AVETGVSPVDLLEAPDGVLEAMVIYLKEKHKETSRK
Ga0196905_10103745F031365AGGAGMSQDAIVLTGLKETIDALQAFDKDAVKQFRKVINTELKIAKEDAQSFVTAKPPLSGWNVTPARNPRTRGGAGWPSWDQSIIRAGITSTKAEGKVRGDYTTSAGALKNISAAGVIYELAGRKNKTSGKNGFISNIENREGDASRLVWKSVDKNKDRIIKNVSEALDVAKAKLQRHLDARKG
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