NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196905_1012124

Scaffold Ga0196905_1012124


Overview

Basic Information
Taxon OID3300022198 Open in IMG/M
Scaffold IDGa0196905_1012124 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2825
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006492Metagenome / Metatranscriptome372Y
F015852Metagenome / Metatranscriptome251Y
F032994Metagenome178Y
F068776Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0196905_10121242F032994AGGAGMNSIINPPVRTYWITFDGDDKASVLGYGWTDPNQRTDTIHVWETTTDEAVWLARLLEYGIVPEIDEQGNLVL
Ga0196905_10121243F006492AGGMDAILEALASYGIAGIFLAVLVYYLNKLTDIHREERKDWQDANDRHVEKFSEVISENTKALVEMRGELKENRCKM
Ga0196905_10121245F015852GGAGGMDWRGHLITVVLAFILGVIVAWKGCESEPITKVVEKPVPQVEYVDRWKVDTVRFVRRELITRYDTIYSEKIVSRLDTLLLIDTVSIVQAWLTEVANYDTTVSDVRVRWSNYQNRTENLTIQYKRKEQRFSVGLHGLVGVQTDFVQNTKPMFGVGLHGSIKKTYLSANYGYNGQHFIGVGVGRTIVSR
Ga0196905_10121246F068776GGAMNYYYYQDAEVRAQVDELLQQNATIQANLGTDSTTEEREEAKRKWMELAKQIREIDPKFYRERIMAQHR
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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