NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196905_1030654

Scaffold Ga0196905_1030654


Overview

Basic Information
Taxon OID3300022198 Open in IMG/M
Scaffold IDGa0196905_1030654 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1617
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001018Metagenome / Metatranscriptome804Y
F002738Metagenome / Metatranscriptome533Y
F013517Metagenome / Metatranscriptome270Y
F073444Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0196905_10306542F073444N/AMNCHQHAVKDFDLQIEMNDLEMEMLKDHGEILPYNEGRVDELEQKKLKLLLGKRFHQNATNAYWYYLAKAGK
Ga0196905_10306543F001018N/AMSQITQTKLNKLNVFELYKHYAVLEQSLPLLTPESQDLAKSELETCANLRSEKIDRIYYAMAAHEDALERIKKEGDLITQAKRHHESQLRSLKNLLGWLRRSLPFDTNKITGKNYQFTLIKKKELTVEVSTDPEFWSSQERELYCIEEEVCTTKRVVLRSMSGEVLSDRTEPSIKTKVLPNLDAIRNAYQNGQQLPSGIKVTQEYGVRSKRIYLEPRVELETSEYPGELLPEDQCTE
Ga0196905_10306544F013517N/AMFESLIAAVIPVMKDLLWAAAGMLLTYMINKVQSQFI
Ga0196905_10306545F002738N/AKENLRFSAELYLETCNILNTAGAGALDFKTILDLYQEAVYATNDDCRRYQKANNPDALKDNDPYAILTPSREELMEEIQSVNAKVEALTDYLSELVKVTTKGLTDLVD
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