NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196905_1058786

Scaffold Ga0196905_1058786


Overview

Basic Information
Taxon OID3300022198 Open in IMG/M
Scaffold IDGa0196905_1058786 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1078
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006618Metagenome368Y
F006842Metagenome363Y
F037113Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0196905_10587863F006842AGGAGGMAYTPAICGDHLVPISECDCVNYLQELKTSAERLVQLTKERKEMK
Ga0196905_10587864F037113GGAGGMSKWTVWVGGSEINWQHYSHKIDAERVAEFWREVKGYDDVLVEEVK
Ga0196905_10587865F006618AGGAGMSKIKQHLESEIVISHFNEESTGFKRYIAFNYEGNEYELTLFWDSFDGYEIYWQVPRVTPDWVVNWDEEAHNGNSFEAYLDELTWEEKR
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