Scaffold Ga0196905_1061494

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0196905_1061494

Scaffold Ga0196905_1061494

Overview

Basic Information
Taxon OID	3300022198 Open in IMG/M
Scaffold ID	Ga0196905_1061494 Open in IMG/M
Source Dataset Name	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1048
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	38.9819	Long. (^o)	-76.3716	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F105073	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0196905_10614941	F105073	GGAG	MAINIPIITEFSDKGLKTAQGAFSTFKGKVAEAEGGMGKFKAGANVALDSVKANAGIFAVAAGGAIASFALKAIDDFSDLALEVDEFRNKTDLTLQQASQWVSYTSDLNIEADAITKIFSRVAKAATDEIPAFQELGVEIALGPDGATDVEATFLRVNDAINSLEDPVKQAAYRADLYGKGWMSASEIIQMSSDDITTALQGVKDFEVIDEKEIEKAKDLREAQDELGDAFKEVSIKIGTVLIPAL

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