Scaffold Ga0196901

Basic Information
Taxon OID	3300022200 Open in IMG/M
Scaffold ID	Ga0196901_1004566 Open in IMG/M
Source Dataset Name	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022200 Open in IMG/M

Scaffold ID

Ga0196901_1004566 Open in IMG/M

Source Dataset Name

Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6261
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (90.48%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (100.00%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

6261

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (90.48%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	38.8455	Long. (^o)	-76.4191	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

38.8455

Long. (^o)

-76.4191

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F003863	Metagenome	464	Y
F004110	Metagenome	452	Y
F007691	Metagenome / Metatranscriptome	346	Y
F013279	Metagenome / Metatranscriptome	272	Y
F017972	Metagenome	237	Y
F018135	Metagenome	236	Y
F031792	Metagenome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196901_100456610	F000821	AGGAGG	MNREYLEAKFDLCIDQAEKNLQEEEIAEAIKNLRRANSAMARLFGIEEEADE
Ga0196901_100456611	F001477	AGGAGG	MSNVYTIHPPKSELILFYEVVEPDGDNTWGGASCIEAMQWLSLAPAGSRLLISAWDSDEEDAHLVGQTIDITEIIQEARQVGR
Ga0196901_100456612	F003863	GGAGG	MESRQVSGKQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKTWIIDSNSRLTVGVHTRANAVPDVAGRTDYDRENEGYNGGEA
Ga0196901_100456613	F017972	GGAGG	VRTRHLSLVTHEHSVTTRVRSNVYSPYGPVNPASTTLLAQETLRANQEAQLLELLSSLESVVESLNYKSFTVYDTLVTATEAVRVALLHTPIDEAGTDV
Ga0196901_100456615	F013279	AGG	MQYDYRCPECNSELTIERSIHEDPREPSCFDCHIPMVRKWASPAVTFKGKGFYSNGG
Ga0196901_100456617	F004110	AGGAG	MAWAMTRANDHNVDLMEPIEERRRHNEQRIAYQMRRVAERYARKEKAVKSGYQTVDEVYYESFTLGQLLPFVIASVIDGTVLEQVQQMIQDGQPKGKSSPSEGGNLLASLIDIKKGYLQLEVEDQTLLRLRHHENFTLQQIAGHLECAISTADRRCAHSLRKLQEILGGISPWG
Ga0196901_10045662	F018135	AGG	MTIERVRHSGAVIVSQFVGEGAGEYLFTRTYYGYTIKQAKAQFKIAVEGEGK
Ga0196901_10045665	F007691	GGAGG	MDTLEQLINEIYEDNYSHLEFDEAMGGEGCNCPIHTTLNTIVKYRDGKEGE
Ga0196901_10045667	F031792	AGGTGG	MSYEPELNDPIFYAEEYEPAVKCFICGDPLDRDDIVWADVEGQIVKEGNDTAWCVACLPSEGESNE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0196901_1004566

Overview

Ecosystem & Geography

Associated Families

Sequences