Scaffold Ga0196901

Basic Information
Taxon OID	3300022200 Open in IMG/M
Scaffold ID	Ga0196901_1008403 Open in IMG/M
Source Dataset Name	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022200 Open in IMG/M

Scaffold ID

Ga0196901_1008403 Open in IMG/M

Source Dataset Name

Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4456
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

4456

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	38.8455	Long. (^o)	-76.4191	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

38.8455

Long. (^o)

-76.4191

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F009746	Metagenome / Metatranscriptome	313	N
F029096	Metagenome	189	Y
F031795	Metagenome	181	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0196901_10084031	F031795	N/A	VTEYTPYPKVIFAGGVEYAGNTISSIGISNGRRDIYEQPLPGIASVQLWTDADTALNVNLSDSVEIQIQDSTATYQTIYTGFISDLDISLDAYGSEGSIAIYNITAVGPLALVNKHLTGGAGFAKEFDGTRVLNILSDVFLQDWSEVPGDLTWDAVSNIATWNNWDGSNIALVNNLIADIDTPGTYELEHYIDGVTDALALVQSAAQSGRGFLFEAPDGSIHYDSYDARATYVPLTLTADDLLAAGLRQAAQWSEIVNDVTVTYRNGGEAYAADYVSQQSYGQLAGTRSTTLHNEVDAQIQAEAFLASRAFPRTYPEELTIPLHSPTVTDLTRDALISMMVGSAVYTQELPAVFGTTFDGFVEGMKWSLTRYTAELTLVCSALSETFPHKLWLQIAPGVTWASYTPTTEEWMDL
Ga0196901_10084033	F029096	AGGA	VAVRETISIKADTRDLGNVFEALKRLDADANNKLKDDVASISAWTATGIKQAAFGFSPMPKQAAVVAQTVRYGRDRLPTVTIGGSKGRASGGANAGQLLFGNEFGGERNAKGSLSAFPNGGFRFPSRTPREGRGNRGYWIFPTVKAMQPEITRRWMLAVNTVLDKWGK
Ga0196901_10084036	F009746	AGG	LANLATFRADLAATLAQAGRVVYAWPNENITPPAIVLVPGSPYISVTAIGGARLAVRFDITCIVNAADNRAALANIETLILSVTGLLAGNISFLGGWSQPTVQQIGNAEMLISQLSIELGTTNT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0196901_1008403

Overview

Ecosystem & Geography

Associated Families

Sequences