NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196901_1043761

Scaffold Ga0196901_1043761


Overview

Basic Information
Taxon OID3300022200 Open in IMG/M
Scaffold IDGa0196901_1043761 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1697
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.8455Long. (o)-76.4191Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035316Metagenome / Metatranscriptome172Y
F053218Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0196901_10437611F035316N/ALVYSYDQLFGQEERGDFSGVSNFTRKWGWYNSIFAIANGDITKFEHISKLNVHECLTFLTFSKEKNELEARQIKSKFK
Ga0196901_10437614F053218AGGAMSKINARSPYYITIGVNPTVANLTQVDMELYVYTGTQTTDRTNLFTLTSFAINNVVTFEISEIVRDYILNTFDGDYATDNVWVDYRTTNYIQGSAQTPSAYTQLTGFDSYGFYEDGANPQNDSGLLQSNLKVVKLDDAPATIPVYTEITNRVSYEL
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