NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224503_10023756

Scaffold Ga0224503_10023756


Overview

Basic Information
Taxon OID3300022201 Open in IMG/M
Scaffold IDGa0224503_10023756 Open in IMG/M
Source Dataset NameSediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_21
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1790
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.79Long. (o)-122.36Alt. (m)Depth (m)17
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058153Metagenome135N
F072361Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0224503_100237561F072361GGAGGMLDLSKSDEAFLSDRFKDYLTVASRDFRHGFEDGVACNDQAYPATDTYLSGYADGYALTQMRQASQHA
Ga0224503_100237562F058153GGAGMARFDFYEILINHPTWEENHNDITDPDIRREIMCDVEDISSEIAPTAMQQTGSEIEWVDLIFNDEVDPAVVVAKTRELLWNYSESMIVDLVQAEAAKHAEAYDA

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