NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224499_10169222

Scaffold Ga0224499_10169222


Overview

Basic Information
Taxon OID3300022206 Open in IMG/M
Scaffold IDGa0224499_10169222 Open in IMG/M
Source Dataset NameSediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)745
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.7Long. (o)-122.34Alt. (m)Depth (m)11
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005454Metagenome / Metatranscriptome400Y
F022015Metagenome / Metatranscriptome216Y
F036489Metagenome / Metatranscriptome170N

Sequences

Protein IDFamilyRBSSequence
Ga0224499_101692221F036489N/AMNKNFKNVVFTTMIGMCTFQIGVIFKQNQVNQVNEWRESIVESYILRTDNGTMLGYNINILDDERLFT
Ga0224499_101692222F005454N/AMRIIKHFNPHFPERETYKCTMRYTTKFGTLDEVNQWRDDQLKNEDYYKSLEESNTKAAGELYKTLNYKSD
Ga0224499_101692223F022015N/AMYYQSKSNITWKQAFAEVNASVLKHEIICAIASEVAGKPVENLIGFTDEQRESVWCDYYNTTELCG

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