NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224500_10220193

Scaffold Ga0224500_10220193


Overview

Basic Information
Taxon OID3300022213 Open in IMG/M
Scaffold IDGa0224500_10220193 Open in IMG/M
Source Dataset NameSediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_4_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)696
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.05Long. (o)-121.934Alt. (m)Depth (m)11
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047069Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0224500_102201931F047069N/ARQANSWGNGTSFQCVVPPVRRAGLLTATGTAGACDGAFSQDLNALWCPTCPSPLKNPGAGATVQAQLWYRDPQNTSNQTTSLSDAIEFSVCP
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