Scaffold Ga0187833_10030586

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0187833_10030586

Scaffold Ga0187833_10030586

Overview

Basic Information
Taxon OID	3300022225 Open in IMG/M
Scaffold ID	Ga0187833_10030586 Open in IMG/M
Source Dataset Name	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_400_PacBio MetaG (Illumina Assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4013
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location Name	Pacific Ocean: Eastern Tropical North Pacific
Coordinates	Lat. (^o)	20.3333	Long. (^o)	-107.0	Alt. (m)		Depth (m)	400
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004439	Metagenome	438	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187833_100305867	F004439	GAG	MKSFIQHLNERVFKSSLSDMLFQPKISEYNRLMIPISSSMYKRIWPDNIRATVFHTTDNEGVKKIAKLEGKKTQISAFFSMQSRYMEVGIATSGGVHAVLEMDADVLLSAKGDVMSYVDKGGRRWITIADLEETSRFTNFSKVLVDLEKMFAALVPKYLTRGEFQDYSTIFQIWHMAKRKVDSKTMSLIIKDYMDGMEKVIKKNIDTFSSAMRSYAKKRSSDYSWDEQIVNNIDVKKMHLFKLPDPDDTMPYPEENDEQDELIAYAASKGWPTKIWDAAIELEIYTRDIAQKELGK

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