NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187827_10030952

Scaffold Ga0187827_10030952


Overview

Basic Information
Taxon OID3300022227 Open in IMG/M
Scaffold IDGa0187827_10030952 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_150_PacBio MetaG (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4638
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (81.25%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)18.2Long. (o)-104.2Alt. (m)Depth (m)150
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001227Metagenome742Y
F012859Metagenome276Y
F059862Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0187827_100309524F012859AGTAGGMVRNRKGLAPWSLAREAGIESATVDGTIEVPQYVQPILSTGFVDEKGDWKGAKSSDKEFIIYMDEAVANGAYILTPSVNADGTWPLDMTGYNDLIIGLKGTNSGNYAIEAVMGPDSLSFANLSPVKAAWNLRGGGFPAMSGDDFSNVLVDGAESTTADIWSIFYINLRLKNQKLLQFKITNNSGDISTIETAFMRLV
Ga0187827_100309526F001227AGGAGMVARRKPRRARRKRSFSINLLETGAGLAFLDAANAGTAAQSFIRGDINGGLQVLSSAFKTNKNDFIKIGIGTVAAKLVLGSLGGSKVLGSVGPLKFRS
Ga0187827_100309529F059862GAGMNFGTEKHLDRIVETLALSALMQASPSKKVEKRLKEIAFPLEIDL
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