NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224509_10035605

Scaffold Ga0224509_10035605


Overview

Basic Information
Taxon OID3300022306 Open in IMG/M
Scaffold IDGa0224509_10035605 Open in IMG/M
Source Dataset NameSediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1660
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.7Long. (o)-122.34Alt. (m)Depth (m)11
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016899Metagenome / Metatranscriptome244N
F097268Metagenome / Metatranscriptome104N
F099109Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0224509_100356053F097268AGGAGMGRNWNGSCEDWLHGDEPYGFDLPDADDYPPMEQWEIDEAKAEILADEERIKEKNDDVIR
Ga0224509_100356054F016899AGGAMAEEKVIMFKKYMLEGTLDPEIQAVFKAAADISNGVFSLQEAANHYKVHPSVIVQFIAESTEYDMIFSKFTEEKQ
Ga0224509_100356055F099109N/AFKKMGRKIRYYRNETTDPRLVRGKLYTMHELARRVKQSPTTIRSRVGTGDTVTDEHFISKKVTRSIWPVFETEIQEKSSQWLRRKL
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