NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224504_10003639

Scaffold Ga0224504_10003639


Overview

Basic Information
Taxon OID3300022308 Open in IMG/M
Scaffold IDGa0224504_10003639 Open in IMG/M
Source Dataset NameSediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6435
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (36.84%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.7Long. (o)-122.34Alt. (m)Depth (m)11
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F091624Metagenome107Y
F105197Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0224504_1000363913F105197N/AMKDKQIHTGVKTDARIDELRAKPLLKCDEAEIRELLSYYDDQQLREIQVNLHKHIRSIERKKKHFFEYWRCKDILKWAQQEECSRPMTSDFLNDVFKIS
Ga0224504_1000363917F091624GAGMTYYELCRRDAKGLPLHELIEMIDKLDKATLIAEEIDMFRALNDEFDSRWNNQENYDRLFESAKTGGSFNRDIIAAFFSADWNNKPRLVRAFPEIFKP

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