NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181351_1000001

Scaffold Ga0181351_1000001


Overview

Basic Information
Taxon OID3300022407 Open in IMG/M
Scaffold IDGa0181351_1000001 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)130872
Total Scaffold Genes148 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)103 (69.59%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019762Metagenome / Metatranscriptome228Y
F058120Metagenome / Metatranscriptome135Y
F078676Metagenome / Metatranscriptome116Y
F089950Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0181351_1000001104F089950N/AMASFFKEGNKLNFNGFKGTIIKITETYRKNVLVLKVTESPKKNSYTHGKVDTIGIFEYPDGTLEFMSVID
Ga0181351_1000001128F058120AGGAMTASEFGELLLKTIKSKDARKSVEGVQKFKECMRDAEIGASYVTWISEPVNLTKIHKALTEELDIPSRAMAIKRVLMSRTQKAVLLVQAMEIAIKRVHKL
Ga0181351_1000001147F078676AGGAMVLKIHGAASAMQNLTADLQYYVCYASSPGAFTDPNPNPPPNQEIARLVNIQVTGRPLDQSQKNFEVFLMSIGLRAMPVILADPIAVLQLADYTTQLSGEGFMWKFAVERGVQFFNFTPYGTPGPVGLLIDDLNGVIIPSGVRITTVTGSPSGWAQNVAFYRMDSI
Ga0181351_100000161F019762AGGAGMLHESIAHTRKEVTIKESQSFRLRMVKHEVVSPKGLFNVDIIQEELKQDGTIIQSNTYNFFMTAQELQTLSTGLTV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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