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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022407 Open in IMG/M |
| Scaffold ID | Ga0181351_1002999 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6019 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (45.45%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Michigan | |||||||
| Coordinates | Lat. (o) | 43.1881 | Long. (o) | -86.344 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014837 | Metagenome / Metatranscriptome | 259 | Y |
| F015354 | Metagenome / Metatranscriptome | 255 | Y |
| F023295 | Metagenome / Metatranscriptome | 210 | Y |
| F063343 | Metagenome | 129 | Y |
| F067530 | Metagenome / Metatranscriptome | 125 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181351_100299910 | F014837 | GAGG | MIQRNINPKPRFVTLTSNPSTGALVGVPLATLFNAAFFRFPQDSIIHYVMVNSTLTCNGAFSQAIGSIAYGQGDQTIGEVFGTGLNNFADNVLWRDELLNPAAGVISEGKSTQIIMNEFFVHTDSSIGIYVNGINASVMINATIAFNPIAEWVNFREPTSGARI |
| Ga0181351_10029993 | F063343 | N/A | MNYLILLGILGLFILGNKVRPNWVSGIKSTLIKLMIPGADRRLFSGFTQATFSWIRNPASWVRVFNWTGVAAGINGLGGVGGVSLISRRHVLFANHVPYPDRPFDIFFVNKDSRTFTYKVTNIQQVGSTDIAIGTLDKDADASLNVYKVLPDNWLQYIANKTIPLTATYIAAGVTTPIRAFVLPVLYTGQDRKVSTADVTNINMAGIAGVSIPAFEVARAFGDGVRGGDSGNPIFAMLGDELVLLGGWYTAADGDDTVGRFPWLLDQKLAIERIMGQKLQVASMSGLTRIA |
| Ga0181351_10029994 | F023295 | AGGAGG | MLLSMLQGIGCMTRVILVPDGQPVQLAEPVRAKVYAFDATGKPVPSSNKVILPAGWYVLPRK |
| Ga0181351_10029995 | F015354 | GGAG | MNPNLSSLIRHGLTAAGGFLVAKGLASADQVGELAGAIVTIAGLVLSMLKNKKATVPTPPPAA |
| Ga0181351_10029997 | F067530 | N/A | MQTLTLTLDPATANALITALEVARRQGDFAVARTAVSVISELIRQDEEFKKLNPPVQIQTAE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |