NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181351_1006864

Scaffold Ga0181351_1006864


Overview

Basic Information
Taxon OID3300022407 Open in IMG/M
Scaffold IDGa0181351_1006864 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4448
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (8.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009202Metagenome / Metatranscriptome321N
F009600Metagenome315Y
F010908Metagenome / Metatranscriptome297Y
F015723Metagenome / Metatranscriptome252Y
F039112Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0181351_10068642F009600N/AMRVPTGGLTAYKVTVSKVPSLNAFYASKHWTVRAKAKEKHCGEVLLQLQEFDCVPITQVHITCLVNYRYDVDNSIMAVKFALDAFKKWGAIRDDSPRYVEQIKLVHSQAIAKDTAEIIFEGLIVDSES
Ga0181351_10068643F039112N/AMTLSLSQEVYSQTIMAQQASIQALQNKVQELQARIEVLEQQAILFI
Ga0181351_10068644F015723N/AMAKIVSITPTGQWQDLFKLEIRFDNGDFGTAFAKSQTPSYAVGDEVEYTKNEKGTIKIQRPNNFGGGGSFGGSFSNASKSSGDDRSASIIRQVALKAAVEYACAAAHDVNTILANAETFNKWMSGQSAAPASHTEHFATRNESPF
Ga0181351_10068646F009202N/AMVVTCSALKKTKLLPLMYPSEELHDLYIREKQLMLSGTAIWLAHQAADKSKGREVQDEMLDHVMNCHHADQLLQQFIDYRQFANSKLNEVMLANARLRINNEEMILEIERLQRIIEDNL
Ga0181351_10068647F010908GAGGMKQILSPFQQYECFEVDGSEFLVQEYTIVQDNDHKLVEWASEMKIKRLKDHKHYTVPISKIITNHKEGRAKLCKCK
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