NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181351_1022011

Scaffold Ga0181351_1022011


Overview

Basic Information
Taxon OID3300022407 Open in IMG/M
Scaffold IDGa0181351_1022011 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2699
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007525Metagenome / Metatranscriptome349Y
F030094Metagenome / Metatranscriptome186Y
F081267Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0181351_10220115F030094GGAGMKLRGIFEGTFESVWSMEVPQAEWDKYLEEHPGIDETDSDDIQQMWDYFKSIGCYDEIDDTVDTDVVMTGIETYGVDVDVNE
Ga0181351_10220117F081267AGGAGMSYEYHWVVVYDEDWGAFMVDAETTDLNFGEVHGAAYNKTTGHWEDVKDDLGIETEYLRLEELLAYNLTRLDLTKKV
Ga0181351_10220118F007525AGTAGGMKTLEGVTVEYTQTIPTSKQMPEFYVWQEGYESYATITYLDRVVEIERGGEMHLTIPNLVNGELTDEYGVIIRYSDDLEAAGINDDIQLMQFIKTISNAGFEVYRMNPWWELFAHNDDMGEIYDTFYEAVDCAIDYILDDKGWD
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