NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181351_1027125

Scaffold Ga0181351_1027125


Overview

Basic Information
Taxon OID3300022407 Open in IMG/M
Scaffold IDGa0181351_1027125 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2433
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005561Metagenome / Metatranscriptome396Y
F006099Metagenome381Y

Sequences

Protein IDFamilyRBSSequence
Ga0181351_10271251F005561N/AGENPQLEQHLQDRNRGNGYRREDGIRNVNYGHEPSNMICETIFTLAENYDHPYRQGRITKQAQNGVRHWIDSIYDNAWKKQQDEWIMREGMLMMFLDGIKFIVLPNLLWPFEQTNQSQWRDAFPAIIPDHYIMLDPQKSPQAVCGICPSYNEDPGYHSSPAGQQIIADNFYQHWICHFR
Ga0181351_10271253F006099N/AYLARYRVPHAIMSLQPEFANNLVGIDRTCIASPVPQEELWPVFEKYGIDTAKLDYAPDSEIYRLYPEVNNWVFEGDYRTYWLRQQAIKFAFLDYLNYDLMIMHDCDCLLIRPYEPMKNGVLNFQVLENERHSWGYYESIKNGLGFERLTPHCFISENVPVLKQDFTDLTRFLEERHQKKWLDAMIDSCPPEPTVPPWGNGELIRWFSEYEFIGNWTMSRRPITMEFQRRYHYDDMEKIGDFDTAYHTAVCDAVPDLRFSLQMDWDRKEVVKFDYYMEKIREKLAQHC
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