NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181351_1035303

Scaffold Ga0181351_1035303


Overview

Basic Information
Taxon OID3300022407 Open in IMG/M
Scaffold IDGa0181351_1035303 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2121
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000714Metagenome / Metatranscriptome924Y
F001125Metagenome / Metatranscriptome769Y
F002207Metagenome / Metatranscriptome583Y

Sequences

Protein IDFamilyRBSSequence
Ga0181351_10353031F000714N/AVPDTYNANLLVTYKVIHGYSDATYETDKVASIEWSLHNGRQSQKQANLYVSQIDAAKEIICEAYADSQDQDTLREIAEALGIELIKEVEWSASIEVSGTYSFNILENDYDMDLESEITDAIFADSHHGNIEINDQEVCNVREN
Ga0181351_10353035F001125AGGCGGMGDRANFGFRDSKENIIFLYGHWAGHRMLENLANAVEQARPRWTDESYATRICVSQLINEEWASETGWGLNVNEIGDNEHKVPVIDWKNRTFTLYEHDLHSPVFSLALDAFVTKYSSQPSMV
Ga0181351_10353036F002207AGGAMPNWCYNTLTIQGPKSEVDMIKDRLNKPFTLAQENHGMGDINANGFPTKIKLVEYNNPVFSFYNIHSYRDEGITDEEYACQPDRSGLDMNDPDWFPKSVAFAKTQKDWYSWNNSNWGTKWDVAVSDDDKF
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Institute for Fundamental Biomedical Research
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