NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190367_1001555

Scaffold Ga0190367_1001555


Overview

Basic Information
Taxon OID3300022470 Open in IMG/M
Scaffold IDGa0190367_1001555 Open in IMG/M
Source Dataset NameHydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-10-11_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13018
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (90.48%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)Depth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015290Metagenome255N
F019588Metagenome228N
F055335Metagenome138N

Sequences

Protein IDFamilyRBSSequence
Ga0190367_100155512F019588GGAGGMGEEKRIEEEVKEVLERLRVPYSVEIVIVDDKSGKVVFRWRRGRGNLVKGMQKTIEVLDRKMGIPVKDLLK
Ga0190367_10015553F015290AGGAGGMLNNKGQAGEIAVFVILVFMIAFAYIFISPIVQNIKDVIPIVADATSWTNTQTQAMNWLFRTWYAFPFFAFIALLVWLIKRAIEKRSGEVV
Ga0190367_10015556F055335AGGAGGMRAYDILLFLVCLEATIGFVSSLHVFPVNYVDASAVQTPADWNLQEVENQTASQSIFDKVMLATDMLFKALSMFFNMLVAIVAIYIPLTTVLGVPSEIALLLQGVVYVVYAWAIIQFLSGRSVKYME
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