NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190367_1003477

Scaffold Ga0190367_1003477


Overview

Basic Information
Taxon OID3300022470 Open in IMG/M
Scaffold IDGa0190367_1003477 Open in IMG/M
Source Dataset NameHydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-10-11_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7303
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)Depth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009582Metagenome315Y
F011723Metagenome287Y

Sequences

Protein IDFamilyRBSSequence
Ga0190367_10034773F011723AGGAGGMVIYNKGLSRDNSTDEGKKIFSLISKPEEKYKVRRIVITDINTNPLLMEVWLERDRIGDAIPLEVANDIAPERVIDLDTEIPEGFEFSIIIKPQNSGSQGSVRGWVEYEIVG
Ga0190367_10034774F009582GAGVEVVERDMVERRGRREFVGGTGRAVKEARVDVVLQRVEEKIGNELNVFPSHIYRYGVNNIFQRAFAYLLGWKSNGEPQKVAVTSGGLLKTAISGAGFEKIQTLTGTAEVNWSPTLQFAWTPNRIRFEAVDYPYIAKFSTDGVEWSDEVYVDGETPRDFDINAQYIKVRRYGGTNATYWIIGMR
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