NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222729_1005380

Scaffold Ga0222729_1005380


Overview

Basic Information
Taxon OID3300022507 Open in IMG/M
Scaffold IDGa0222729_1005380 Open in IMG/M
Source Dataset NameMetatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-27-M (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1193
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058360Metagenome / Metatranscriptome135Y
F072127Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0222729_10053803F072127GGAMSVLKEVHWGLVWRDFILEDGRVIPEHRISGCPQPQVWRKISEVTDNEREECEERLLSMAGAGMDPRRRDQPFWAELNQYLAYTYLRYKQAA
Ga0222729_10053804F058360N/ASVELILVSFVMWYGNGQPAIISLLKSTAYNAVTLVWIGYLKQQPQLVPRVEAATNENAIGMTWAASGAMPVPDPGFMLRVEQAVDRVLSRSDWPRPTAQGSRIVSRKPNPEEGN
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