NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0242651_1001276

Scaffold Ga0242651_1001276


Overview

Basic Information
Taxon OID3300022511 Open in IMG/M
Scaffold IDGa0242651_1001276 Open in IMG/M
Source Dataset NameMetatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-O (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1698
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Planctomyces → unclassified Planctomyces → Planctomyces sp. SH-PL62(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029822Metagenome / Metatranscriptome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0242651_10012761F029822AGGAGGVKTTLFAVALVVALSLSAVAANSNKPAASQHKAGNPNAEWIVNNGTPTPPSACHPCLFYGGDINTSDSNAAGMSDENTLLIVGGSSTYGAVTIPEGVTASVYGILFNVQADAAFDPLTASYDVRSGVSEGNGGTSLASGTGPAVVTATGRNFLGLNEYTVSVSWSTPVTLTAGTYWFNATPNCTNTLDGSCFVFRQFVSNTTSLTNNVRGAWQPIHEMYLNSSFFGFTWANWCDSSLGFNAHQCAGMSFGLRGTQQ
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