NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224548_1011406

Scaffold Ga0224548_1011406


Overview

Basic Information
Taxon OID3300022518 Open in IMG/M
Scaffold IDGa0224548_1011406 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 P2 20-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)991
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3534Long. (o)19.0472Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008922Metagenome / Metatranscriptome326Y
F062950Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0224548_10114061F008922AGGTGGMTTKQRLACGAAILRSIDARRQRTGNRNELLALEQAIVDRELIELVTGGLCDEKRELAGDRFRKRHVPAAARDTGVPYEKDLRGANR
Ga0224548_10114062F062950GGGGGMNRIELSGKSQGKGRNGYFQLHSVELINIPTDPDGQVLNIDFYPRRRVNCVGPARLLLNVEDATKLAQFLGEAVENRPPVASIEHGVLVCECGHLGTPRLEESGYQVSHALVEIVGDTIIASGWDGS
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